A helper program that extracts the input and output filenames from rules in snakemake workflow

An awesome tool to visualize snakemake rule graphs

Resuable CI workflows for our snakemake pipelines

streamlined singularity python client (spython) for singularity

Random selection of useful code chunks and examples for bioinformatics

A Github action for running a Snakemake workflow

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

Custom wrappers for recurring MPUSP Snakemake rules

Pipeline for automatic processing and quality control of mass spectrometry data

A standardised workflow to explore and analyse prokaryotic methylation patterns for Nanopore sequencing data

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

A template for standard compliant snakemake-workflows

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

This is the development home of the Snakemake wrapper repository, see

Transcript assembly and quantification for RNA-Seq

A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.

R package to Import and Modify SVG (XML) Graphic Files

Updated FlaGs version. Replaces tkinter module for matplotlib for the graphical output.

An R package implementing the UMAP dimensionality reduction method.

A statically generated catalog of available Snakemake workflows

Visualize and annotate genomic coverage with ggplot2

GEKKO Python for Machine Learning and Dynamic Optimization

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

Codon Usage Analysis and Prediction of Gene Expressivity

Facilitating UniRep Enzyme Engineering

Reimplementation of the UniRep protein featurization model.

An example GitHub Action (CI) to build a Singularity container