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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.7k 634

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 240 208

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 185 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    62 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 50 47

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 11

Repositories

Showing 10 of 68 repositories
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 37 MIT 11 1 0 Updated Mar 24, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,734 MIT 634 1,045 (1 issue needs help) 118 Updated Mar 24, 2026
  • snakemake-wrapper-utils Public

    Utility functions and classes shared between Snakemake wrappers

    snakemake/snakemake-wrapper-utils’s past year of commit activity
    Python 4 MIT 6 1 2 Updated Mar 24, 2026
  • snakemake-scheduler-plugin-firstfit Public

    A Snakemake scheduler plugin that selects the first jobs that fit available resources.

    snakemake/snakemake-scheduler-plugin-firstfit’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 24, 2026
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt’s past year of commit activity
    Python 185 MIT 32 3 1 Updated Mar 23, 2026
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 240 208 8 28 Updated Mar 23, 2026
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 50 MIT 47 40 7 Updated Mar 23, 2026
  • snakemake-interface-report-plugins Public

    The interface for Snakemake report plugins.

    snakemake/snakemake-interface-report-plugins’s past year of commit activity
    Python 4 MIT 2 2 1 Updated Mar 23, 2026
  • snakemake-interface-logger-plugins Public
    snakemake/snakemake-interface-logger-plugins’s past year of commit activity
    Python 8 MIT 2 3 3 Updated Mar 20, 2026
  • snakemake-scheduler-plugin-milp Public

    A Snakemake scheduler plugin using Mixed-Integer Linear Programming (MILP).

    snakemake/snakemake-scheduler-plugin-milp’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 19, 2026
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