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Development guidlines for software within NBIS.

18 9 Updated Jul 1, 2025

FHIR for Research - 2023 Update

Jupyter Notebook 8 5 Updated May 16, 2025

Page Tab specification

4 Updated Jan 31, 2025

Managing the progress for the RDA Working Group on Fair Mappings (https://www.rd-alliance.org/groups/fair-mappings-wg/).

Makefile 11 10 Updated Feb 17, 2026

This repository stores metadata templates in use at SciLifeLab, organized according to data type.

Python 1 2 Updated Feb 19, 2026

MLX: An array framework for Apple silicon

C++ 24,800 1,606 Updated Mar 25, 2026

JSON validator derived from AJV supporting ontology and taxonomy validation.

JavaScript 21 6 Updated May 22, 2025

SciLifeLab Data Platform

HTML 2 6 Updated Mar 26, 2026

Docker image for compiling crypt4gh applications built with emscripten into wasm

Dockerfile 1 Updated Dec 1, 2025
TypeScript 2 5 Updated Mar 25, 2026
Rust 2 1 Updated Oct 17, 2023

Basic functions commonly used by tools developed at KNoWS - IDLab.

Java 2 Updated Mar 17, 2026

Web and command-line application supported by the European Commission’s DIGIT for the validation of RDF data.

Java 25 3 Updated Mar 20, 2026

Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

Jupyter Notebook 36 6 Updated Mar 19, 2026

Ontology lifecycle management

Dockerfile 310 59 Updated Mar 23, 2026

Embeddable Postgres with real-time, reactive bindings.

TypeScript 14,944 368 Updated Mar 26, 2026

orchestration for singularity containers (under development)

Python 77 18 Updated May 11, 2024

Multi-Repository Data Submission using ISA-JSON

Java 10 9 Updated Mar 11, 2026

FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.

HTML 13 8 Updated Nov 5, 2025

Solid Technical Reports

HTML 555 86 Updated Mar 26, 2026

Documentation for data submissions from life science research in public repositories

Python 5 Updated Mar 23, 2026

Repository for the EU-funded HORIZON-ZEN project

8 2 Updated Mar 27, 2025

FAIR IN A BOX

Ruby 5 2 Updated Jan 28, 2026

This is a stand-alone OAI-PMH data provider. It serves records in any metadata format from directories of XML files using the directory name as metadata prefix, the filename as identifier and the f…

PHP 18 11 Updated Aug 27, 2025

Repository for the Distributed Analysis

2 Updated Jul 1, 2024

MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

Vue 25 22 Updated Mar 26, 2026

Synthetic Patient Population Simulator

Java 3,055 845 Updated Mar 19, 2026

DBpedia Archivo - Augmented Ontology Archive powered by Databus

Python 26 8 Updated Aug 26, 2024
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