Stars
Real-time visualization of Claude Code agent orchestration — see your agents think, branch, and coordinate as they work.
Easily build an UShER tree of genomes for any virus in RefSeq/GenBank
Official home of genome aligner based upon notion of Cactus graphs
aweMAGs: a fully automated workflow for eukariotic MAGs
Experimental Nextflow executor plugin for running pipelines on the Open Science Grid via HTCondor
Dude, where are my bytes: Duc, a library and suite of tools for inspecting disk usage
Statistical inference of growth-based deep mutational scanning (DMS) screens
Record the CPU and memory activity of a process 📈
Wastewater-Based Epidemiology using Phylogenetic Placements
sunburst plots for taxonomy - working to update Krona
An example pipeline showing how to use Globus when your source data store, compute, and results store are all in different locations
Improving Adaptive Immune Receptor Alignment
Fast DNA search and [host] depletion using minimizers
MHC Class I and II genotyper for Non-Human primates with high-accuracy short reads
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Millimeter-Wave Radar-Based Multi-Human Tracking and Fall Detection System
Production-grade Rust-native trading engine with deterministic event-driven architecture
Shell scripts, submit files, and dag files for basecalling Oxford Nanopore signal files on CHTC's HTCondor cluster
geNomad: Identification of mobile genetic elements
Single-cell analysis in Python. Scales to >100M cells.
Codespaces but open-source, client-only and unopinionated: Works with any IDE and lets you use any cloud, kubernetes or just localhost docker.
A tool for generating consensus long-read assemblies for bacterial genomes
Make awesome display tables using Python