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vv137/README.md

👋 Hi, I'm Minsoo Kim (김민수)

PhD Candidate in Physics at Sungkyunkwan University Researching Computational Biophysics, Protein Structure Prediction, and Molecular Dynamics

📍 Suwon, South Korea


🔬 Research Interests

  • Computational Biophysics
  • Molecular Dynamics Simulation
  • Bioinformatics
  • Protein Structure Prediction
  • Protein–Protein Interaction
  • Parallel & High-Performance Computing

🎓 Education

Sungkyunkwan University

  • PhD Candidate (M.S./Ph.D. Integrated Program) — 2019–Present
  • B.S. in Physics — 2016–2019

🧑‍🔬 Academic Positions

Research Assistant Korea Institute for Advanced Study 2022–Present


📄 Selected Publications

DeepFold-PLM: Accelerating Protein Structure Prediction via Efficient Homology Search Using Protein Language Models Bioinformatics, 2025

DeepFold: Enhancing Protein Structure Prediction through Optimized Loss Functions and Template Features Bioinformatics, 2023


💻 Projects

Some repositories you may find interesting:

  • Protein structure prediction tools
  • Molecular dynamics simulation workflows
  • Bioinformatics utilities
  • Research code for computational biophysics

➡ See all projects: https://github.com/vv137


🔗 Links


📫 Contact

Email: vv137.xyz@gmail.com

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  1. DeepFoldProtein/DeepFold-PLM DeepFoldProtein/DeepFold-PLM Public

    DeepFold-PLM

    Python 10

  2. DeepFoldProtein/DeepFold DeepFoldProtein/DeepFold Public

    Framework for project DeepFold.

    Python 3

  3. DeepFoldProtein/OTalign DeepFoldProtein/OTalign Public

    OTalign: Protein sequence alignment for remote homologs using Protein Language Models and Unbalanced Optimal Transport.

    Python 4

  4. delibae/claude-prism delibae/claude-prism Public

    A offline-first scientific writing workspace powered by Claude. LaTeX + Python + 100+ scientific skills all running locally.

    TypeScript 716 59

  5. DeepFoldProtein/patchr DeepFoldProtein/patchr Public

    Structure inpainting and simulation-ready setup for proteins, DNA, RNA, and complexes

    Python 7