Stars
Make sankey, alluvial and sankey bump plots in ggplot
Tool for the Quality Control of Long-Read Defined Transcriptomes
AI-Powered Bioinformatics Research Assistant. Built on OpenClaw.
A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries
Source for "The computational guide to Fiber-seq"
Visualizing transcript structure and annotation using ggplot2
An implementation of the Interactive Brokers API for Rust
A nimble options research and backtesting library for Python
Open-source Rust framework for building event-driven live-trading & backtesting systems
Download market data from Yahoo! Finance's API
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
A talking LLM that runs on your own computer without needing the internet.
direct RNA nanopore sequencing barcode design and demultiplexing
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
Rust implementation of Needleman-Wunsch & Smith-Waterman sequence alignment
Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing
Simulator of an ONT device with ReadUntil gRPC support
CLI tool for flexible and fast adaptive sampling on ONT sequencers
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.