List and download schemes from pubMLST.org and other BIGSDB servers

Material for Trainning session with QIIME2 for Microbial diversity analysis using 16S rRNA gene

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

BSR-Based Allele Calling Algorithm

A cross-platform command-line tool for executing jobs in parallel

A triplestore database and web application for the bacterium Campylobacter jejuni

Scripts to download genomes from the NCBI FTP servers

Real-time tracking of influenza evolution

Useful bash one-liners for bioinformatics.

GitHub Pages website for Phyloviz organization

Microbial Whole Genome Sequence data analysis labs for 2014

🆔 Scan contig files against PubMLST typing schemes

SVG based genome viewer written in javascript using D3

Resequencing pipeline

preparing files for phyloviz software

assemblies, annotations, further analysis on sequenced strains from the EHEC outbreak

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

software version control visualization