The ImageJ plugin to run deep-learning models

The Java library to run Deep Learning models

Public domain software for processing and analyzing scientific images

SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.

Advanced Tool for Labeling And Segmentation

A conda-smithy repository for imglyb.

A conda-smithy repository for pyimagej.

A conda-smithy repository for scyjava.

JPype is cross language bridge to allow Python programs full access to Java class libraries.

a free, open-source web app for annotating, training, and evaluating image understanding algorithms

Plugins for SciJava dependency grabbing

Create your own auto-update framework

Draggable Tabs for JavaFX

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

Auto updating launcher for JavaFX Applications

Functional image processing

Fast and frugal disk based k-mer counter

JFreeChart - Future State Edition

Java implementation of the SemVer Specification

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…

Copy number vaiation detection from SNP arrays

Simulations for population biology and evolutionary ecology

Documentation for Renjin, the R interpreter for the JVM

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ