Remove or replace gaps in fasta formatted files

IQ-TREE software version 2: phylogenetics by maximum likelihood

A terminal workspace with batteries included

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.

Code for rapidNJ by Martin Simonsen, Thomas Mailund and Christian N. S. Pedersen.

Colour palettes for data visualisation, inspired by the plumage of Australian birds

Software for painlessly estimating average nucleotide diversity within and between populations

GenPipes Read the Docs repository

Terminal disk space navigator 🔭

Assessing confidence in introgression among four populations

Finds SNP sites from a multi-FASTA alignment file

Recovering genes from targeted sequence capture data

A massively parallel tool for model selection and tree inference on thousands of genes

BWK awk modified for biological data

List of Computer Science courses with video lectures.

RAxML Next Generation: faster, easier-to-use and more flexible

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis