Pyranges: a Python framework for ultrafast sequence interval operations

profiler desktop versions

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Create and annotate Alternative Splicing aware Gene Regulatory Networks

k-mer-based non-Bayesian Taxonomic Classifier

Pairwise whole genome aligner

Want to make a neighbourhood-scale synteny plot? Have too many genomic neighbourhoods? SyntenyQC may help!

GWAS and rare variants tests at high speed using regenie

WDL pipelines for running regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

Benchmarking results of GFFx, compared with other commonly-used tools

genotype Structural Variants Using Pre-Phased Reads

A alignment with visualization program for windows.

A filter algorithm with program to filter an alignment or mapping file

implicit pangenome graph

A genomic assessment tool

A GUI tools for Gap closed based on assembly graph

a gap-filling tools of genome in complex region.

De novo construction of isoforms from long-read data

PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers

Easy genomic regions for short-read variant calling

Panaln: Indexing pangenome for read alignment