XOOS (sbX Optimized Open Source) Analysis Tools 🧬

Bam Error Stats Tool (best): analysis of error types in aligned reads.

A Geometric Algebra library for Zig

A fork of exonerate: a generic tool for sequence alignment

Capture audio from a microphone on your Raspberry Pi Pico or any RP2040 based board. 🎤

ziglang + htslib

A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus

A repository for the schemas used for the Data Repository Service.

Bioinformatics I/O libraries in Rust

A Python-based EGA download client

Visualization tool for nanopore data

Simple makefile-based build for musl cross compiler

Fast calculations of linkage-disequilibrium in large-scale human cohorts

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Ma…

De novo genome assembly and multisample variant calling

BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data

High performance Workflow Runner

An accurate base caller for Illumina non-patterned sequencing platforms

Main gperftools repository

Jsonnet - The data templating language

Tools for analyzing 10X Genomics data

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

A single molecule sequence assembler for genomes large and small.

Graph-based alignment (Hierarchical Graph FM index)

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

Aligner for sequencing data

C++ Library to parse Illumina InterOp files