a graph explorer of the Epstein emails

Collection of tools for working with RDF data

Knowledge Graph Enhanced Software Repair Framework

Gene Ontology enrichment visualisation

A 3d ontology visualizer focusing on OBOFoundry.org ontologies

Repository for the Open Energy Ontology (OEO)

Token Oriented Object Notation (TOON) for Linked Data

The ontological description of the relations in the causalgraph python package.

PyBioPAX: A python implementation of the BioPAX object model

Dependecy Map data analysis using INDRA

🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings

The Rocq Prover is an interactive theorem prover, or proof assistant. It provides a formal language to write mathematical definitions, executable algorithms and theorems together with an environmen…

A cookiecutter template for KG generation.

A graph for accessing and comparing knowledge concerning phenotypes across species and genetic backgrounds.

Code for the paper "BPP: A Platform for Automated Prediction of Biochemical Pathways," including data processing, model training, and case studies.

PathIntegrate Python package for pathway-based multi-omics data integration

python based YAML-to-OWL-converter

Official repository of "ODesign: A World Model for Biomolecular Interaction Design"

🚀 Awesome Tauri Apps, Plugins and Resources

GraphGen4Code: a toolkit for creating code knowledge graphs based on WALA code analysis and extraction of documentation and forum content.

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.

A super fast Graph Database uses GraphBLAS under the hood for its sparse adjacency matrix graph representation. Our goal is to provide the best Knowledge Graph for LLM (GraphRAG).

Claude Code. Any Model. The most powerful AI coding agent now speaks every language.

A tutorial on using Open Biological and Biomedical Ontologies (OBO)