Optimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection

Single-molecule Workflow for Analysing RNA Modifications

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

Enhancing {ggplot2} plots with statistical analysis 📊📣

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

A curated list of practical guide resources of LLMs (LLMs Tree, Examples, Papers)

Nanopore direct RNA basecaller

Sequence modeling benchmarks and temporal convolutional networks

A command line utility to display dependency tree of the installed Python packages

A set of tools to keep your pinned Python dependencies fresh.

pipreqs - Generate pip requirements.txt file based on imports of any project. Looking for maintainers to move this project forward.

A PyTorch Basecaller for Oxford Nanopore Reads