A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.

A Nextflow pipeline for Antimicrobial Resistatnce exploration in metagenomic samples

A NextFlow pipeline for Twist NGS DNA Methylation data analysis

Use Iconify icons in HTML-based Quarto documents (over 200,000 open source vector icons).

A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

ggplot2 and table1 summary statistics quick exploration of data

Course homepages for some of the courses given at SciLifeLab

A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

ARGpore2

Pipe-friendly Framework for Basic Statistical Tests in R

Display HTML Elements on Full Screen in 'Shiny' Apps Using 'Screenfull.js'

scRNA-seq

a quick shiny server in a Singularity Container. For @griznog!

The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.

methylR: a single shiny solution from sequencer data to pathway analysis

a ggplot PCA with complex annotation

Acquired time lapse images from the IncuCyte® and processed with MATLAB to create a time-lapse video of one particular aggregate of bacteria

DNA methylome-based validation of induced sputum as an effective protocol to study lung immunity: construction of a classifier of pulmonary cell types

A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).

utility for uploading sequence and metadata to the NGP