A cat(1) clone with wings.

A clean, dark Visual Studio Code theme that celebrates the lights of Downtown Tokyo at night.

🏙 A clean, dark Neovim theme written in Lua, with support for lsp, treesitter and lots of plugins. Includes additional themes for Kitty, Alacritty, iTerm and Fish.

🦌 Soothing pastel theme for VSCode

😸 Soothing pastel theme for the high-spirited!

darkstudio. A dark grey alternative to RStudio's default dark theme.

Atom's iconic One Dark theme for Visual Studio Code

A Zsh theme

🚀 Bring your favorite shell wherever you go through the ssh. Xonsh shell, fish, zsh, osquery and so on.

Fish-like autosuggestions for zsh

tmux source code

iTerm2 is a terminal emulator for Mac OS X that does amazing things.

🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…

Structural variation caller using third generation sequencing

A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

FASTQ sequence quality visualisation with Emoji

Repository to host tool-specific module files for the Nextflow DSL2 community!

Grayskull 💀 - Recipe generator for Conda

Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research

⚡ Better `pre-commit`, re-engineered in Rust

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

Simple test framework for Nextflow pipelines

Python package with helper tools for the nf-core community.

Nextflow training material

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the …

Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.