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Safer - Compatible Updates to Fix Vulnerable Dependencies

Status: Open.

#187 In disq-bio/disq;

· safer-bot opened on Jul 16, 2025

Reenable samtools read count cross checks in HtsjdkReadsRddTest.testReadIntervals

Status: Open.

#163 In disq-bio/disq;

· cmnbroad opened on Jan 31, 2022

Migrate end-to-end tests from Travis CI to Github Actions

Status: Open.

#160 In disq-bio/disq;

· heuermh opened on Jan 26, 2022

·  

0.4.0

Updating maven-failsafe-plugin to 3.0.0-M5 fails CI integration tests under openjdk11

Status: Open.

#150 In disq-bio/disq;

· heuermh opened on Jan 31, 2021

·  

0.4.0

Updating google-cloud-nio dependency to 0.122.5 fails unit tests

Status: Open.

#145 In disq-bio/disq;

· heuermh opened on Jan 28, 2021

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0.4.0

Split guessing fails with long reads

bugSomething isn't workingSomething isn't working

Status: Open.

#126 In disq-bio/disq;

· lbergelson opened on Jan 27, 2020

Read in parallel from NCBI Sequence Read Archive (SRA) format

Status: Open.

#93 In disq-bio/disq;

· heuermh opened on Mar 8, 2019

Considering other libraries for models, is Disq too tightly bound to htsjdk?

Status: Open.

#87 In disq-bio/disq;

· heuermh opened on Feb 18, 2019

Set up coveralls for unit test coverage

Status: Open.

#83 In disq-bio/disq;

· tomwhite opened on Jan 28, 2019

Add top-level and package javadoc

Status: Open.

#62 In disq-bio/disq;

· tomwhite opened on Nov 5, 2018

Investigate performance implications of using Java serialization for genotypes

Status: Open.

#55 In disq-bio/disq;

· heuermh opened on Oct 24, 2018

Create Github issue and pull request templates

Status: Open.

#38 In disq-bio/disq;

· heuermh opened on Sep 25, 2018