NextflowSeqera

Deploying GPU Accelerated Nextflow Pipelines on Nebius Kubernetes with Seqera

This is a companion post to our protein design pipeline blog post. While the previous post covers the science and the pipeline itself, this one walks through the infrastructure side: how we set up Nebius AI Cloud to run GPU-accelerated Nextflow workflows at production scale using managed Kubernetes and Seqera.

Florian Wuennemann
Daria Balashova
Florian Wuennemann & Daria Balashova
Mar 20, 2026
Seqera

SSH into Your Studio Session: Work the Way You Want, Where Your Data Resides

Seqera Studios now supports direct SSH access to running Studio sessions. This means you can connect to a live, cloud-based Studio container using any standard SSH client — or better yet, use VS Code’s Remote - SSH extension to work inside the remote session as if it were your local machine.

Rob NewmanRob Newman
Mar 18, 2026
NextflowSeqera

Introducing the Seqera AI CLI - Your AI-Powered Terminal Assistant for Nextflow Development

Today we introduce the Seqera AI CLI – an intelligent command-line assistant that brings context-aware AI directly to your Nextflow development. This powerful tool transforms how you build, run, and manage Nextflow pipelines, all from the comfort of your terminal.

Sasha DagayevSasha Dagayev
Mar 03, 2026
Seqera

50% Faster Delivery, 4x Faster Pipeline Development: Transforming Bioinformatics Operations

Here, we showcase how a life sciences bioinformatics core recently transformed their operations with Nextflow and Seqera, to achieve a 50% improvement in data delivery time and 4x faster pipeline development.

Lizzie BolithoLizzie Bolitho
Feb 11, 2026
NextflowCommunity

From Complete Beginner to nf-core Contributor

As part of my training in the scientist training programme, I undertook a Master’s project to develop, validate, and implement a long-read bioinformatics pipeline for rare disease diagnostics using Nextflow.

Nour MahfelNour Mahfel
Jan 20, 2026
Seqera

Streamlined Version Control for Studios: Introducing Git Repository Integration

At the recent Nextflow Summit, we announced a powerful new capability for Seqera Studios: native Git repository integration. This update transforms how teams manage interactive analysis environments by bringing version control directly into the Studio creation workflow, enabling reproducible, shareable, and team-friendly development environments.

Rob NewmanRob Newman
Jan 15, 2026
Seqera

Building a Scalable Protein Design Pipeline with Seqera AI for Adaptyv's Nipah Binder Competition

Here, we demonstrate how we used Seqera AI to build a scalable protein design pipeline that helped us rank 6th (based on ipSAE ranking) in Adaptyv’s Nipah Binder Competition

Florian Wuennemann
Edmund Miller
Florian Wuennemann & Edmund Miller
Jan 08, 2026
CommunityNextflow

Paving the Way for the Next Generation of Nextflow Ambassadors in Africa

As Nextflow Ambassadors, embarked on an inspiring journey to empower the next Tunisian generation of bioinformaticians and more across Africa - through the power of Nextflow.

Firas ZemzemFiras Zemzem
Dec 15, 2025
Seqera

End-to-End AI-Enabled Variant Analysis in Seqera Studios with the Help of AIVA

Studios enables researchers to perform AIVA's AI-powered variant analysis – enabling seamless integration between bioinformatics pipelines and clinical analysis.

Drew DiPalma
Tarun Mamidi
Drew DiPalma & Tarun Mamidi
Dec 11, 2025
NextflowSeqera

Bioinformatics Pipelines Through the Ages: From Bash to Nextflow to Agents

Bioinformatics tools and workflows are rapidly transforming to address increasing complexity and demands for reproducibility, scalability, and collaboration. Here's my retrospective on this evolution in the industry.

Ken BrewerKen Brewer
Dec 10, 2025
Seqera

Simplifying Workflow Automation: Node-RED Integration for Seqera

We’re delighted to announce that we’ve just released a new Node-RED integration for Seqera which democratizes automation, enabling researchers to build workflows without depending on IT teams.

Phil EwelsPhil Ewels
Nov 25, 2025
Nextflow

From Workflows to People: Building Community through Nextflow and nf-core Training

In 2021, my team at the UAB Biological Data Science Core (U-BDS) fully transitioned to using Nextflow and nf-core pipelines as our standard for all analytical processing which can be automated prior to data interpretation and visualization.

Lara IanovLara Ianov
Oct 30, 2025
Nextflow

Nextflow 25.10 and the New Plugin Registry: Major Updates for the Bioinformatics Community

Today, we're excited to announce key updates in Nextflow 25.10, including static types, workflow inputs and outputs, new commands (nextflow auth and nextflow launch), and S3 performance improvements. We've also launched the official Nextflow Plugin Registry to streamline plugin discovery and management across the community.

Ben Sherman
Phil Ewels
Paolo Di Tommaso
Ben Sherman, Phil Ewels & Paolo Di Tommaso
Oct 24, 2025
MultiQC

MultiQC Turns 10: Shaping the Gold Standard in Bioinformatics Reporting

Ten years ago, a simple idea emerged: what if we could visualize QC metrics in a single, interactive report? That became MultiQC, and today we're celebrating a decade of transforming bioinformatics worldwide.

Phil EwelsPhil Ewels
Oct 24, 2025
Seqera

What’s New at Seqera: GxP-Aligned Bioinformatics, Expanded Data Connections, AI Integrations, and More

I began today's Nextflow Summit talking about our vision to make scientists' lives simpler, one pipeline at a time. The same platform, but better suited to bioinformatics in 2025. Every product update we’ve announced today builds on this foundation, moving us through the complete journey from scientific infrastructure, through innovation and velocity. From GxP-aligned pipeline versioning and in-platform data exploration on HPC, to AI in Platform and our new MCP Server, here’s the latest Seqera updates you won’t want to miss.

Evan FlodenEvan Floden
Oct 23, 2025
Nextflow

Efficient S3 Transfers in Nextflow: Moving to AWS SDK v2

The upcoming 25.10 release of Nextflow uses the AWS Java SDK v2, which brings a significant performance boost to pipelines running on Amazon S3. In this blog post, we will show how this new version of Nextflow improves S3 performance, both at the level of basic S3 operations and end-to-end workflow runs.

Jorge Ejarque
Ben Sherman
Jorge Ejarque & Ben Sherman
Oct 23, 2025